Downloading XHMMThe XHMM program and source code is currently available to download for academic use only. zip file is found here.
The scripts include tools for:
- Visualization of the PCA and the called CNVs
- Conversion of XHMM's .xcnv format to PLINK's .cnv format
Installing XHMMXHMM was developed assuming compilation on Linux with gcc version 4.4. Other requirements are the pthread and lapack C libraries.
[Also, to modify the command-line options, it is necessary to install Gengetopt (recommended version 2.22 or higher).]
Uncompress the xhmm zip file, where you want to install it: unzip master.zip Change to the xhmm directory: cd statgen-xhmm-* Run make to install the software (which starts by automatically compiling the included hmm++ library): make